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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19981489_19983512_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19981489 - 19983512
Intron Length:
2024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGGA
5'SS Class:
major
3'SS Sequence:
CCTCTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACTTTTAAACC
Flanking Amino Acid:
RLHSLKTTPKGVKSRSASLN
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
65
41.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.7
0.56
0.8
66
34.8
Minor 5ss
43.7
-0.7
3
58.5
46
Minor BPS
58.5
0.25
1.6
66.28
39.9

Associated Gene:

Gene:
MTUS1
Ensembl Gene ID:
ENSAPLG00000009766
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022729
19960700 - 20044293
83594