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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_19984923_20017597_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19984923 - 20017597
Intron Length:
32675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
TACAGATTAACT
Flanking Amino Acid:
RHQSLSSFGSVDKGKQRSPK
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
66.3
0.41
1
61
37.5
Major PPT
84.9
0.78
0.9
76.9
42.1
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
50.2
0.09
2.1
71.25
45

Associated Gene:

Gene:
MTUS1
Ensembl Gene ID:
ENSAPLG00000009766
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022729
19960700 - 20044293
83594