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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20017816_20028867_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20017816 - 20028867
Intron Length:
11052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTTTCTCCTACA
Flanking Amino Acid:
TIVIQHLQSEREEALKQHKE
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
90
0.9
0.6
84.8
23.1
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
49.1
-0
2.1
72.55
39

Associated Gene:

Gene:
MTUS1
Ensembl Gene ID:
ENSAPLG00000009766
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010199
19996404 - 20044190
47787
ENSAPLT00000022729
19960700 - 20044293
83594