About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20028255_20028867_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20028255 - 20028867
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACGCCG
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTTTCTCCTACA
Flanking Amino Acid:
CTYPPCAAARREEALKQHKE
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.32
1.3
48.8
47.3
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
90
0.9
0.6
84.8
23.1
Minor 5ss
36.2
-1.6
3.3
40.2
45.4
Minor BPS
49.1
-0
2.1
72.55
39

Associated Gene:

Gene:
MTUS1
Ensembl Gene ID:
ENSAPLG00000009766
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041452
20027811 - 20044190
16380