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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20037107_20037620_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20037107 - 20037620
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTGAC
5'SS Class:
major
3'SS Sequence:
TGTCATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AAACATTCATCT
Flanking Amino Acid:
EKYKAQLQEQVDNLNITHEN
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
68.4
36.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
77
0.61
0.9
70.2
39.7
Minor 5ss
34.5
-1.8
3
43.4
44.3
Minor BPS
42.6
-0.4
1.8
55.77
39.5

Associated Gene:

Gene:
MTUS1
Ensembl Gene ID:
ENSAPLG00000009766
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010199
19996404 - 20044190
47787
ENSAPLT00000041452
20027811 - 20044190
16380
ENSAPLT00000022729
19960700 - 20044293
83594