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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20043101_20043973_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20043101 - 20043973
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAG
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTTCTCTGATG
Flanking Amino Acid:
ARMDKHMELSRQLSTEQAVL
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
70.1
35.7
Major BPS
79
0.72
1
69
38.9
Major PPT
88.8
0.87
0.7
84.5
30.4
Minor 5ss
26.7
-2.7
2.8
30.4
43
Minor BPS
54.9
0.01
1.7
63.75
38.5

Associated Gene:

Gene:
MTUS1
Ensembl Gene ID:
ENSAPLG00000009766
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041452
20027811 - 20044190
16380
ENSAPLT00000022729
19960700 - 20044293
83594
ENSAPLT00000010199
19996404 - 20044190
47787