Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20049428_20050224_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

3UTR

Intron Coordinates:

20049428 - 20050224

Intron Length:

797

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTATGTTAT

5'SS Class:

weak_major

3'SS Sequence:

GATTATACAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

TAATGTTTGATT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.7

0.44

1.1

36.6

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

63.2

0.3

1.1

57.1

42.6

Minor 5ss

53.1

0.11

2.5

76.1

39.5

Minor BPS

55.8

0.26

1.8

39.5

Associated Gene:

Gene:

PDGFRL

Ensembl Gene ID:

ENSAPLG00000009881

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010291

20049268 - 20058139

8872