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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20055714_20056030_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20055714 - 20056030
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTATAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGTTTCTCAATA
Flanking Amino Acid:
SIKYHLLYVEVPKGPPSTTI
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.1
0.39
1.1
72.7
36.7
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
63.7
0.43
1.5
70.59
35.4

Associated Gene:

Gene:
PDGFRL
Ensembl Gene ID:
ENSAPLG00000009881
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040803
20049644 - 20058139
8496
ENSAPLT00000010291
20049268 - 20058139
8872