Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20056325_20057790_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20056325 - 20057790

Intron Length:

1466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTAGT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTTGCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

ACTATTTAAACT

Flanking Amino Acid:

KTGSTYIFFTDKEELFVPTP

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

83.7

34.8

Major BPS

81.6

0.78

0.8

24.9

Major PPT

75.4

0.57

0.8

76.1

32.4

Minor 5ss

37.5

-1.4

2.8

52.1

44.3

Minor BPS

54.1

0.21

1.7

69.95

41.5

Associated Gene:

Gene:

PDGFRL

Ensembl Gene ID:

ENSAPLG00000009881

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040803

20049644 - 20058139

8496

ENSAPLT00000010291

20049268 - 20058139

8872