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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20074698_20075318_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20074698 - 20075318
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
WIRFSFWMALGFFIYFAYGI
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
77.1
37.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.3
0.7
1
83.2
31.8
Minor 5ss
37.1
-1.5
3.1
48.8
41.4
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SLC7A2
Ensembl Gene ID:
ENSAPLG00000010063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020927
20074287 - 20094997
20711
ENSAPLT00000010480
20074510 - 20118187
43678
ENSAPLT00000043004
20074287 - 20103703
29417
ENSAPLT00000038530
20074510 - 20118218
43709