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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20075428_20076484_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20075428 - 20076484
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAATAAC
5'SS Class:
major
3'SS Sequence:
TATTTCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATATTTTAACT
Flanking Amino Acid:
PQNQQKVAFMVPLLPFLPSF
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
0.9
72.6
31.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81
0.7
0.7
79
29.5
Minor 5ss
30.1
-2.3
2.7
32.9
36.2
Minor BPS
70.6
0.73
1.2
79.98
35.5

Associated Gene:

Gene:
SLC7A2
Ensembl Gene ID:
ENSAPLG00000010063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010480
20074510 - 20118187
43678
ENSAPLT00000043004
20074287 - 20103703
29417
ENSAPLT00000038530
20074510 - 20118218
43709
ENSAPLT00000020927
20074287 - 20094997
20711