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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20076652_20076964_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20076652 - 20076964
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTCCATCATT
Flanking Amino Acid:
TTVNFLVGLLAFLVCGLSVL
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.1
0.63
0.9
73.2
36.4
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
60.1
0.4
2
83.35
37.8

Associated Gene:

Gene:
SLC7A2
Ensembl Gene ID:
ENSAPLG00000010063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043004
20074287 - 20103703
29417
ENSAPLT00000038530
20074510 - 20118218
43709
ENSAPLT00000020927
20074287 - 20094997
20711
ENSAPLT00000010480
20074510 - 20118187
43678