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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20077171_20078364_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20077171 - 20078364
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAGTACTTTATT
Flanking Amino Acid:
SLVATCVLILRYQPSLTYEQ
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.7
0.67
0.9
75.8
38.1
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
56.7
0.29
1.8
73.99
43

Associated Gene:

Gene:
SLC7A2
Ensembl Gene ID:
ENSAPLG00000010063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010480
20074510 - 20118187
43678
ENSAPLT00000043004
20074287 - 20103703
29417
ENSAPLT00000038530
20074510 - 20118218
43709
ENSAPLT00000020927
20074287 - 20094997
20711