About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20084848_20085519_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20084848 - 20085519
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTTTTGGTATTT
Flanking Amino Acid:
FVGFDCIATTGEEVKNPQKA
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1
63.4
37
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
44
-0.7
3.3
60.4
46.7
Minor BPS
44.5
-0.3
2.7
74.56
43.3

Associated Gene:

Gene:
SLC7A2
Ensembl Gene ID:
ENSAPLG00000010063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038530
20074510 - 20118218
43709
ENSAPLT00000020927
20074287 - 20094997
20711
ENSAPLT00000010480
20074510 - 20118187
43678
ENSAPLT00000043004
20074287 - 20103703
29417