Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20085657_20086203_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20085657 - 20086203

Intron Length:

547

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAATTACT

5'SS Class:

major

3'SS Sequence:

TTGTTCTTCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TTGTTCTTCATA

Flanking Amino Acid:

EYLINLTAITENFSPYENVT

Intron Amino Acid Position:

251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.9

0.42

1.1

Major BPS

70.8

0.52

70.6

31.6

Major PPT

80.4

0.68

0.8

76.6

32.2

Minor 5ss

39.7

-1.2

2.7

49.6

40.2

Minor BPS

63.6

0.42

1.7

74.21

38.4

Associated Gene:

Gene:

SLC7A2

Ensembl Gene ID:

ENSAPLG00000010063

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010480

20074510 - 20118187

43678

ENSAPLT00000043004

20074287 - 20103703

29417

ENSAPLT00000038530

20074510 - 20118218

43709

ENSAPLT00000020927

20074287 - 20094997

20711