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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20086370_20087920_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20086370 - 20087920
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
FAVFLILLLSGLLSFGVKES
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.5
0.87
0.7
84.4
30.2
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
SLC7A2
Ensembl Gene ID:
ENSAPLG00000010063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020927
20074287 - 20094997
20711
ENSAPLT00000010480
20074510 - 20118187
43678
ENSAPLT00000043004
20074287 - 20103703
29417
ENSAPLT00000038530
20074510 - 20118218
43709