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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20088077_20089295_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20088077 - 20089295
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTATGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAACACTAAATA
Flanking Amino Acid:
GWNLILSYIIGTSSVARAWS
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67
0.38
1.2
68.5
41.3
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
47.2
-0.2
1.8
54.74
37.3

Associated Gene:

Gene:
SLC7A2
Ensembl Gene ID:
ENSAPLG00000010063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043004
20074287 - 20103703
29417
ENSAPLT00000038530
20074510 - 20118218
43709
ENSAPLT00000020927
20074287 - 20094997
20711
ENSAPLT00000010480
20074510 - 20118187
43678