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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20089687_20103628_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20089687 - 20103628
Intron Length:
13942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATTT
Flanking Amino Acid:
WSRSQSVTSKSSPSTMLPCG
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.8
86
32.7
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
SLC7A2
Ensembl Gene ID:
ENSAPLG00000010063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043004
20074287 - 20103703
29417