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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20142969_20159636_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20142969 - 20159636
Intron Length:
16668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTCTGTCATT
Flanking Amino Acid:
MEHIRMPKVENVRLLDRV
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.4
40.3
Major BPS
100
1.24
0.5
100
0
Major PPT
84.1
0.77
0.8
84.8
30
Minor 5ss
30
-2.3
3.1
41.6
45
Minor BPS
45.9
-0.2
2.3
66.31
45.7

Associated Gene:

Gene:
MTMR7
Ensembl Gene ID:
ENSAPLG00000010246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010713
20142871 - 20188872
46002