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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20159760_20160508_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20159760 - 20160508
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAATT
5'SS Class:
major
3'SS Sequence:
AATTCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTGGCATAACT
Flanking Amino Acid:
NSSDTRKETWVLHSQISSIE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
77.2
37.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.3
0.57
0.9
66.2
39.8
Minor 5ss
45.1
-0.5
2.9
58.4
45.9
Minor BPS
52.9
0.17
2.2
77.67
44.4

Associated Gene:

Gene:
MTMR7
Ensembl Gene ID:
ENSAPLG00000010246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043320
20143484 - 20188872
45389
ENSAPLT00000010713
20142871 - 20188872
46002
ENSAPLT00000044214
20149955 - 20188872
38918