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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20160672_20164335_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20160672 - 20164335
Intron Length:
3664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
GATACCTTACTG
Flanking Amino Acid:
YISLIRLARPVKYEELYCFS
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
86.1
0.81
0.9
84.6
36
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
54.6
0.01
1.8
58.24
43.3

Associated Gene:

Gene:
MTMR7
Ensembl Gene ID:
ENSAPLG00000010246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044214
20149955 - 20188872
38918
ENSAPLT00000043320
20143484 - 20188872
45389
ENSAPLT00000010713
20142871 - 20188872
46002