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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20181017_20181781_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20181017 - 20181781
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATATTCTCATTT
Flanking Amino Acid:
PYYRTMKGFMVLIEKDWISF
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.4
46
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.9
0.72
0.8
78.6
33.8
Minor 5ss
38.9
-1.2
2.8
45.7
43.7
Minor BPS
52
0.14
1.8
71.15
40.1

Associated Gene:

Gene:
MTMR7
Ensembl Gene ID:
ENSAPLG00000010246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010713
20142871 - 20188872
46002
ENSAPLT00000044214
20149955 - 20188872
38918
ENSAPLT00000043320
20143484 - 20188872
45389