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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20181832_20183546_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20181832 - 20183546
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TATAACTGAATG
Flanking Amino Acid:
WISFGHKFNHRYGNLDGDPK
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
75.6
0.58
0.9
73.3
37.1
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
51.6
-0
1.7
59.85
41.4

Associated Gene:

Gene:
MTMR7
Ensembl Gene ID:
ENSAPLG00000010246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044214
20149955 - 20188872
38918
ENSAPLT00000043320
20143484 - 20188872
45389
ENSAPLT00000010713
20142871 - 20188872
46002