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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20183748_20185539_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20183748 - 20185539
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGAAAG
5'SS Class:
major
3'SS Sequence:
TCTATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATACATTTGACT
Flanking Amino Acid:
CNSQKERRELKIQERTYSLW
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
67.1
38.1
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
89.7
0.89
0.7
88
29.1
Minor 5ss
40.6
-1
2.8
48.9
41.4
Minor BPS
57.4
0.31
1.5
72.82
37.5

Associated Gene:

Gene:
MTMR7
Ensembl Gene ID:
ENSAPLG00000010246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044214
20149955 - 20188872
38918
ENSAPLT00000043320
20143484 - 20188872
45389
ENSAPLT00000010713
20142871 - 20188872
46002