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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20185681_20187946_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20185681 - 20187946
Intron Length:
2266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTAAT
5'SS Class:
major
3'SS Sequence:
CCCTCAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTCCCCTCAATT
Flanking Amino Acid:
PQMAPCNFLYKFWSGMYNRF
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80.7
33.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
72.1
0.5
0.9
62.1
37.6
Minor 5ss
37.7
-1.4
3.1
50.6
40.3
Minor BPS
68
0.64
1.5
81.83
39.8

Associated Gene:

Gene:
MTMR7
Ensembl Gene ID:
ENSAPLG00000010246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043320
20143484 - 20188872
45389
ENSAPLT00000010713
20142871 - 20188872
46002
ENSAPLT00000044214
20149955 - 20188872
38918