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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20197285_20197992_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20197285 - 20197992
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATATAAA
5'SS Class:
major
3'SS Sequence:
TCTTATTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TATGTCTTATTT
Flanking Amino Acid:
FLSSFMEKRTLCHCRRAKEE
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
69.6
36.3
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
84.1
0.77
0.8
77.1
36.8
Minor 5ss
41
-1
2.7
50.5
46.1
Minor BPS
60.1
0.4
1.7
76.26
41

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575