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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20198137_20198864_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20198137 - 20198864
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAATCT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTAATATTAAGT
Flanking Amino Acid:
KMQRQHELSESCSPSALQAR
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
70.2
34.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
46
-0.4
2.9
66
45.1
Minor BPS
53.1
0.17
1.9
74.55
41.8

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575