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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20198934_20199018_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20198934 - 20199018
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTTTTCAGG
Flanking Amino Acid:
EAKRQTVLDKYEQLTQMKAA
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
48.1
-0.2
2.1
58.79
43.6

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575