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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20199078_20199171_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20199078 - 20199171
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATAATTAATA
Flanking Amino Acid:
ELVKSIEELAKKNLLLEPSL
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.3
35.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
41.4
-1
3.1
56.7
41.9
Minor BPS
57.3
0.22
1.8
68.23
37.4

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575