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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20199300_20201517_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20199300 - 20201517
Intron Length:
2218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAATTTTAAAT
Flanking Amino Acid:
PDTFPELSELSISQLTNMNE
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.1
0.43
1
62.8
42.2
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
65
0.55
1.4
78.52
37.3

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575