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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20202650_20203582_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20202650 - 20203582
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGTTTGCTGATG
Flanking Amino Acid:
VLAPSPSSFPYLYSKPAAMP
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
80.8
31.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
42.1
-0.9
2.8
56.5
35.6
Minor BPS
43.8
-0.6
2.3
55.14
40.6

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575