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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20203684_20204569_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20203684 - 20204569
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTAATACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATA
Flanking Amino Acid:
VYVTGPLINNFTMHSDLGKI
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.3
79.7
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.65
1
72.4
41.5
Minor 5ss
46.8
-0.3
2.5
58.7
39.4
Minor BPS
75.5
0.8
1.1
78.11
33

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575