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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20204685_20205548_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20204685 - 20205548
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TAATAGTTACTT
Flanking Amino Acid:
TVNNLTININILLPPQFPQE
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
86.8
0.83
0.8
81.4
35.2
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
45.5
-0.2
2.3
66.88
43.8

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575