About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20205624_20208345_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20205624 - 20208345
Intron Length:
2722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTTCTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TCTTCTTTGACA
Flanking Amino Acid:
QIEALRAAHAAIAEIQKDVE
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.3
54
45.2
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
82
0.72
0.9
79.4
32.6
Minor 5ss
27.6
-2.6
3
26.6
36.9
Minor BPS
79.5
0.92
1
81.99
33.2

Associated Gene:

Gene:
VPS37A
Ensembl Gene ID:
ENSAPLG00000010973
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011442
20196908 - 20208482
11575