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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20218832_20223212_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20218832 - 20223212
Intron Length:
4381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
CAGCAGTTAACA
Flanking Amino Acid:
YLMKSCKNLKGGLQEVAEQL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
45.8
-0.3
2.2
54.93
43.4

Associated Gene:

Gene:
CNOT7
Ensembl Gene ID:
ENSAPLG00000011340
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011821
20209102 - 20224958
15857