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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20238095_20239269_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20238095 - 20239269
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
GTTGGCATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTTACTATAATG
Flanking Amino Acid:
TPGGLNSTSKNESLLFPAKP
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
59.7
40.5
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
71
0.47
1
62.1
43.3
Minor 5ss
46
-0.4
2.8
59.3
39.8
Minor BPS
60.2
0.18
1.7
68.97
38.7

Associated Gene:

Gene:
ZDHHC2
Ensembl Gene ID:
ENSAPLG00000011779
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012306
20237481 - 20268462
30982