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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20239363_20239546_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20239363 - 20239546
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTTGTAAGT
Flanking Amino Acid:
KKYWLLPVFSSLGDGCSFPT
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.1
0.84
0.8
84.8
35.4
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
51.3
0.12
2.2
77.06
40.2

Associated Gene:

Gene:
ZDHHC2
Ensembl Gene ID:
ENSAPLG00000011779
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012306
20237481 - 20268462
30982