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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20240937_20241614_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20240937 - 20241614
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCTTTTATT
Flanking Amino Acid:
DLQYFIKFWTNGLPDTQAKF
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.5
0.82
0.7
85.4
28
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
71
0.74
1.5
85.88
34

Associated Gene:

Gene:
ZDHHC2
Ensembl Gene ID:
ENSAPLG00000011779
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012306
20237481 - 20268462
30982