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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20241736_20246455_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20241736 - 20246455
Intron Length:
4720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATCTTTACAT
Flanking Amino Acid:
CILKMDHHCPWVNNCVGFSN
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
85.5
0.8
0.9
85.7
33.5
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
58.5
0.34
1.7
73.64
43.3

Associated Gene:

Gene:
ZDHHC2
Ensembl Gene ID:
ENSAPLG00000011779
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012306
20237481 - 20268462
30982