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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20247801_20248743_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20247801 - 20248743
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATCTTGCAACT
Flanking Amino Acid:
LPIYTRTMSGAIRYCDRCHL
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.1
41.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
89.1
0.88
0.6
89
20.2
Minor 5ss
34.5
-1.8
2.8
42.5
44.3
Minor BPS
45.2
-0.2
2.1
64.84
39.6

Associated Gene:

Gene:
ZDHHC2
Ensembl Gene ID:
ENSAPLG00000011779
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012306
20237481 - 20268462
30982