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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20248865_20252087_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20248865 - 20252087
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
AAAATTATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGGTTTTAAAA
Flanking Amino Acid:
FTLPMNPSKEFHLSYSDKES
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.7
27.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.8
0.38
1.1
56
47.5
Minor 5ss
39
-1.2
3.1
47.5
42.5
Minor BPS
59.6
0.3
1.5
67.43
39.5

Associated Gene:

Gene:
ZDHHC2
Ensembl Gene ID:
ENSAPLG00000011779
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012306
20237481 - 20268462
30982