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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20282651_20283856_R

Intron Information:

Intron Rank:
144833
Intron Class:
major
Intron Phase:
Intron Coordinates:
20282651 - 20283856
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
69.9
42.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.5
0.53
0.8
71.4
34.7
Minor 5ss
32.9
-2
3.4
48.3
47.3
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025306
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030119
20282420 - 20284857
2438