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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20335584_20341107_R

Intron Information:

Intron Rank:
130056
Intron Class:
major
Intron Phase:
Intron Coordinates:
20335584 - 20341107
Intron Length:
5524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCCAT
U12 Branch Point Sequence:
TGTTTTCCCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
62.1
0.3
1.4
72.5
43.5
Major PPT
78
0.63
0.8
73.5
31.7
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
41.5
-0.6
2
56.17
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017188
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046845
20335233 - 20344504
9272