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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20341262_20342221_R

Intron Information:

Intron Rank:
130057
Intron Class:
major
Intron Phase:
Intron Coordinates:
20341262 - 20342221
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
AAATTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTAAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.3
0.34
1
61.1
43.7
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
62
0.46
1.8
83.39
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017188
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046845
20335233 - 20344504
9272