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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20508474_20508698_F

Intron Information:

Intron Rank:
136746
Intron Class:
major
Intron Phase:
Intron Coordinates:
20508474 - 20508698
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTATTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.1
71.6
40.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.2
0.48
1
66.1
40
Minor 5ss
40
-1.1
2.8
51.5
44.9
Minor BPS
52.3
0.15
2
71.31
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023659
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041648
20488391 - 20508953
20563
ENSAPLT00000026864
20507866 - 20508953
1088