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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20508474_20509320_F

Intron Information:

Intron Rank:
136747
Intron Class:
major
Intron Phase:
Intron Coordinates:
20508474 - 20509320
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.1
71.6
40.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.1
0.88
0.7
84
29.8
Minor 5ss
40
-1.1
2.8
51.5
44.9
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023659
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028794
20508032 - 20509791
1760