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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20640428_20642659_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20640428 - 20642659
Intron Length:
2232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTCATTCACA
Flanking Amino Acid:
LNYVAARRQQELKDPHCRDE
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.4
0.89
0.7
85
29.8
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
61
0.34
2.1
76.36
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003125
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027486
20640389 - 20658868
18480
ENSAPLT00000003163
20636310 - 20654859
18550