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Intron Name: Anas_platyrhynchos_platyrhynchos_4_20642927_20654616_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20642927 - 20654616

Intron Length:

11690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTATC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

TGCTCCTAATCT

Flanking Amino Acid:

ELAAALNEFDNKIILDPMTF

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

87.3

Major BPS

81.9

0.79

0.9

80.1

Major PPT

100

1.12

0.4

100

Minor 5ss

42.7

-0.8

2.8

59.4

38.1

Minor BPS

57.5

0.31

76.39

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003125

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027486

20640389 - 20658868

18480

ENSAPLT00000003163

20636310 - 20654859

18550