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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20654825_20658650_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20654825 - 20658650
Intron Length:
3826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTTACACAA
5'SS Class:
weak_major
3'SS Sequence:
GGCTTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTCTCAAACC
Flanking Amino Acid:
DLLSEYMNNVSQLSFPYLHW
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.1
1.3
53.6
39.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.9
0.4
0.9
65
41.2
Minor 5ss
34.9
-1.7
3
41.1
39.1
Minor BPS
54.3
0.12
2
70.56
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003125
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027486
20640389 - 20658868
18480