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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2085933_2092687_F

Intron Information:

Intron Rank:
144840
Intron Class:
major
Intron Phase:
Intron Coordinates:
2085933 - 2092687
Intron Length:
6755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.76
0.8
82.4
33.2
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
57.9
0.23
1.8
74.69
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028078
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019304
2085736 - 2101916
16181